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p110delta/p85alpha with taselisib (GDC-0032)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5DXU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 PEG
Crystal Properties Matthews coefficient Solvent content 2.64 53.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.096 α = 90 b = 108.604 β = 90 c = 142.223 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2014-01-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.99988 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.91 86.37 99.9 0.063 20.4 8.1 31603
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.91 3.16 99.9 0.044 5.6 8.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5DXU 2.91 86.37 30936 667 99.9 0.243 0.242 0.2393 0.304 0.2983 RANDOM 77.62
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.65 4.72 -7.36
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.333 r_dihedral_angle_4_deg 14.4 r_dihedral_angle_3_deg 13.109 r_dihedral_angle_1_deg 5.205 r_angle_other_deg 2.591 r_long_range_B_refined 1.278 r_long_range_B_other 1.278 r_angle_refined_deg 1.121 r_scangle_other 0.921 r_mcangle_it 0.867
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.333 r_dihedral_angle_4_deg 14.4 r_dihedral_angle_3_deg 13.109 r_dihedral_angle_1_deg 5.205 r_angle_other_deg 2.591 r_long_range_B_refined 1.278 r_long_range_B_other 1.278 r_angle_refined_deg 1.121 r_scangle_other 0.921 r_mcangle_it 0.867 r_mcangle_other 0.867 r_scbond_it 0.58 r_scbond_other 0.58 r_mcbond_it 0.554 r_mcbond_other 0.553 r_chiral_restr 0.058 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 8502 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing