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LECTIN FROM BAUHINIA FORFICATA IN COMPLEX WITH TN-PEPTIDE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 293 PROTEIN CONCENTRATION 5-8 MG/ML IN 0.05 M HEPES BUFFER (pH 7.5) AND 0.15 M NACL.
PRECIPITANT: 25% (W/W) PEG1500, 0.1 M NACL, 0.1 M BIS-TRIS PROPANE (pH 9.0).
DROPLETS RATIO: 1:1
Crystal Properties Matthews coefficient Solvent content 2 38.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.865 α = 90 b = 88.502 β = 90 c = 110.783 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX300-HS 2015-11-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.17 50 98.5 0.078 0.085 0.032 11.7 6.9 147131
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.17 1.19 77.1 0.446 0.507 0.237 0.81 4.2 5701
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.17 30.3 139485 4270 97.21 0.108 0.1073 0.1301 0.1624 RANDOM 19.997
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.5 -0.53 0.03
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 43.694 r_dihedral_angle_2_deg 34.497 r_dihedral_angle_4_deg 20.185 r_sphericity_bonded 14.709 r_dihedral_angle_3_deg 13.366 r_dihedral_angle_1_deg 7.45 r_rigid_bond_restr 6.022 r_angle_other_deg 3.127 r_mcangle_it 2.988 r_mcbond_it 2.498
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 43.694 r_dihedral_angle_2_deg 34.497 r_dihedral_angle_4_deg 20.185 r_sphericity_bonded 14.709 r_dihedral_angle_3_deg 13.366 r_dihedral_angle_1_deg 7.45 r_rigid_bond_restr 6.022 r_angle_other_deg 3.127 r_mcangle_it 2.988 r_mcbond_it 2.498 r_mcbond_other 2.422 r_angle_refined_deg 1.985 r_chiral_restr 0.161 r_bond_refined_d 0.019 r_gen_planes_refined 0.013 r_gen_planes_other 0.006 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3670 Nucleic Acid Atoms Solvent Atoms 486 Heterogen Atoms 79
Software Software Software Name Purpose HKL-3000 data collection HKL-3000 data scaling REFMAC refinement PDB_EXTRACT data extraction HKL-3000 data reduction PHASER phasing