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Human MnSOD-azide complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.8 296 1.8M potassium phosphate, pH 7.8
Crystal Properties Matthews coefficient Solvent content 2.35 47.62
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.9 α = 90 b = 77.9 β = 90 c = 238.442 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV++ 2016-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU FR-E SUPERBRIGHT 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.77 67.5 96 12.7 5.6 40981
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.77 1.8 84 2 3.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.77 67.46 38096 1964 94.1 0.21 0.209 0.2165 0.239 0.2433 RANDOM 20.12
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.32 -0.16 -0.32 1.03
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.156 r_dihedral_angle_3_deg 11.7 r_dihedral_angle_4_deg 10.554 r_dihedral_angle_1_deg 5.444 r_long_range_B_refined 3.646 r_long_range_B_other 3.483 r_scangle_other 2.351 r_mcangle_it 1.874 r_mcangle_other 1.874 r_scbond_it 1.463
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.156 r_dihedral_angle_3_deg 11.7 r_dihedral_angle_4_deg 10.554 r_dihedral_angle_1_deg 5.444 r_long_range_B_refined 3.646 r_long_range_B_other 3.483 r_scangle_other 2.351 r_mcangle_it 1.874 r_mcangle_other 1.874 r_scbond_it 1.463 r_scbond_other 1.463 r_angle_refined_deg 1.333 r_mcbond_it 1.138 r_mcbond_other 1.134 r_angle_other_deg 0.912 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3162 Nucleic Acid Atoms Solvent Atoms 354 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement Coot model building