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DNA polymerase kappa extending beyond a bulky major benzo[a]pyrene adduct
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 295.15 PEG400, ammonium nitrate
Crystal Properties Matthews coefficient Solvent content 2.64 53.39
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 65.25 α = 90 b = 128.82 β = 90 c = 167.46 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2015-12-09 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CLSI BEAMLINE 08ID-1 0.97949 CLSI 08ID-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 40 99.5 6.8 4.7 28865
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 3 40 27673 1130 99.17 0.2061 0.20364 0.2051 0.2657 0.2631 RANDOM 78.422
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 12.8 -8.6 -4.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.07 r_dihedral_angle_4_deg 17.744 r_dihedral_angle_3_deg 16.738 r_long_range_B_refined 8.843 r_long_range_B_other 8.84 r_dihedral_angle_1_deg 5.905 r_mcangle_it 5.786 r_mcangle_other 5.785 r_scangle_other 5.767 r_mcbond_it 3.481
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.07 r_dihedral_angle_4_deg 17.744 r_dihedral_angle_3_deg 16.738 r_long_range_B_refined 8.843 r_long_range_B_other 8.84 r_dihedral_angle_1_deg 5.905 r_mcangle_it 5.786 r_mcangle_other 5.785 r_scangle_other 5.767 r_mcbond_it 3.481 r_mcbond_other 3.479 r_scbond_it 3.415 r_scbond_other 3.415 r_angle_refined_deg 1.314 r_angle_other_deg 1.033 r_chiral_restr 0.075 r_bond_refined_d 0.008 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6682 Nucleic Acid Atoms 936 Solvent Atoms 82 Heterogen Atoms 74
Software Software Software Name Purpose REFMAC refinement iMOSFLM data reduction SCALA data scaling