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Methylmalonyl-COA MUTASE, Y89F Mutant, substrate complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1REQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.74 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 120.2 α = 90 b = 161.89 β = 104.88 c = 88.7 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 IMAGE PLATE MARRESEARCH MIRROR 1996-11-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ELETTRA BEAMLINE 5.2R ELETTRA 5.2R
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.16 99 98 0.05 0.05 15.1 3.3 170993 6 45
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.16 2.27 87.2 0.261 0.261 5.1 3.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1REQ 2.2 20 165507 7634 99.9 0.256 0.246 0.2301 0.292 0.2639 SAME AS 1REQ 44
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.28 1.27 0.72 2.05
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 34.3 p_staggered_tor 18.5 p_planar_tor 5.3 p_scangle_it 3.4 p_mcangle_it 2.4 p_scbond_it 2.4 p_mcbond_it 1.6 p_multtor_nbd 0.164 p_xhyhbond_nbd 0.15 p_singtor_nbd 0.124
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 34.3 p_staggered_tor 18.5 p_planar_tor 5.3 p_scangle_it 3.4 p_mcangle_it 2.4 p_scbond_it 2.4 p_mcbond_it 1.6 p_multtor_nbd 0.164 p_xhyhbond_nbd 0.15 p_singtor_nbd 0.124 p_chiral_restr 0.116 p_xyhbond_nbd 0.11 p_planar_d 0.038 p_angle_d 0.033 p_plane_restr 0.01 p_bond_d 0.009 p_angle_deg p_hb_or_metal_coord p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20592 Nucleic Acid Atoms Solvent Atoms 1094 Heterogen Atoms 426
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling