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PanDDA analysis group deposition -- Endothiapepsin changed state model for fragment F2X-Entry Library G03b
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 290 0.1 M ammonium acetate, 0.1 M sodium acetate, 24-30% PEG 4000
Crystal Properties Matthews coefficient Solvent content 1.89 34.75
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.224 α = 90 b = 72.932 β = 109.24 c = 52.4 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2019-03-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MAX IV BEAMLINE BioMAX 0.827 MAX IV BioMAX
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.08 49.52 95 0.055 0.059 0.999 16.2 6.961 124804 15.697
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.08 1.14 0.908 0.692 0.748 0.807 2.68 6.34 22298
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 1.08 49.52 124804 6498 94.94 0.149 0.14825 0.14901 0.1794 RANDOM 12.498
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.03 -0.13 -0.17 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.329 r_dihedral_angle_4_deg 17.2 r_dihedral_angle_3_deg 11.081 r_dihedral_angle_1_deg 9.302 r_angle_refined_deg 1.802 r_angle_other_deg 1.636 r_mcangle_it 1.529 r_mcbond_it 1.002 r_mcbond_other 0.997 r_chiral_restr 0.092
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.329 r_dihedral_angle_4_deg 17.2 r_dihedral_angle_3_deg 11.081 r_dihedral_angle_1_deg 9.302 r_angle_refined_deg 1.802 r_angle_other_deg 1.636 r_mcangle_it 1.529 r_mcbond_it 1.002 r_mcbond_other 0.997 r_chiral_restr 0.092 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_gen_planes_other 0.003 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2369 Nucleic Acid Atoms Solvent Atoms 315 Heterogen Atoms 150
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction REFMAC phasing PHENIX refinement