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humanized rat catechol O-methyltransferase in complex with 6-(4-fluorophenyl)-8-hydroxy-3-(5-pyrrolo[3,2-c]pyridin-1-ylpentyl)quinazolin-4-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other inhouse model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 295 AMMONIUM SULPHATE, CHES, PH 9
Crystal Properties Matthews coefficient Solvent content 2.24 44.98
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.967 α = 90 b = 54.212 β = 90 c = 81.524 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL PSI PILATUS 6M 2010-03-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 1.000000 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.2 33.5 97.9 0.058 0.067 0.999 11.99 4.17 68572 -3 16.968
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.2 1.23 97.5 0.889 1.024 0.656 1.66
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT inhouse model 1.2 33.5 59877 3167 90.05 0.1429 0.1411 0.1772 0.1775 RANDOM 12.749
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.12 0.27 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.201 r_dihedral_angle_4_deg 21.477 r_rigid_bond_restr 15.624 r_sphericity_free 13.084 r_dihedral_angle_3_deg 11.991 r_sphericity_bonded 7.132 r_dihedral_angle_1_deg 5.153 r_angle_refined_deg 1.935 r_angle_other_deg 1.416 r_mcbond_it 0.156
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.201 r_dihedral_angle_4_deg 21.477 r_rigid_bond_restr 15.624 r_sphericity_free 13.084 r_dihedral_angle_3_deg 11.991 r_sphericity_bonded 7.132 r_dihedral_angle_1_deg 5.153 r_angle_refined_deg 1.935 r_angle_other_deg 1.416 r_mcbond_it 0.156 r_chiral_restr 0.124 r_mcbond_other 0.122 r_bond_refined_d 0.021 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1673 Nucleic Acid Atoms Solvent Atoms 230 Heterogen Atoms 75
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing