☰ Navigation Tabs
rat catechol O-methyltransferase in complex with N-[5-(2-aminopurin-9-yl)pentyl]-5-(4-fluorophenyl)-2,3-dihydroxybenzamide at 1.40A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other inhouse model
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 295 AMMONIUM SULPHATE, CHES, PH 9
Crystal Properties Matthews coefficient Solvent content 2.21 44.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.87 α = 90 b = 54.267 β = 90 c = 81.075 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2009-09-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.978200 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.4 36.72 99.7 0.048 0.052 0.999 23.75 6.88 43996 -3 17.578
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.4 1.44 97.1 0.251 0.274 0.963 6.49
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT inhouse model 1.4 36.72 40981 2199 97.99 0.1125 0.1107 0.111 0.1466 0.1436 RANDOM 11.675
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.21 -0.28
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.441 r_dihedral_angle_4_deg 21.14 r_rigid_bond_restr 18.002 r_sphericity_free 13.203 r_dihedral_angle_3_deg 10.59 r_sphericity_bonded 6.704 r_dihedral_angle_1_deg 5.031 r_angle_refined_deg 1.777 r_angle_other_deg 1.044 r_mcbond_it 0.158
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.441 r_dihedral_angle_4_deg 21.14 r_rigid_bond_restr 18.002 r_sphericity_free 13.203 r_dihedral_angle_3_deg 10.59 r_sphericity_bonded 6.704 r_dihedral_angle_1_deg 5.031 r_angle_refined_deg 1.777 r_angle_other_deg 1.044 r_mcbond_it 0.158 r_mcbond_other 0.124 r_chiral_restr 0.105 r_bond_refined_d 0.016 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1679 Nucleic Acid Atoms Solvent Atoms 294 Heterogen Atoms 67
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction PHASER phasing