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Structure of Cerulean Fluorescent Protein at 1.02 Angstrom resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2WSO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 100mM HEPES 7.0, 12% PEG8000, 100mM MgCl2
Crystal Properties Matthews coefficient Solvent content 2.19 43.92
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.01 α = 90 b = 62.8 β = 90 c = 69.92 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2014-03-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.97934 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.02 46.73 99.8 0.05 19.51 6.03 114476
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.02 1.05 99.5 0.838 2.06 5.46
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2WSO 1.02 46.72 108788 5687 99.83 0.09972 0.09893 0.0999 0.11466 0.1154 RANDOM 15.437
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.26 -0.06 0.31
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 39.591 r_dihedral_angle_2_deg 37.114 r_sphericity_bonded 17.654 r_dihedral_angle_4_deg 14.329 r_dihedral_angle_3_deg 13.975 r_long_range_B_refined 7.343 r_long_range_B_other 7.269 r_dihedral_angle_1_deg 7.164 r_scangle_other 4.336 r_rigid_bond_restr 4.255
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 39.591 r_dihedral_angle_2_deg 37.114 r_sphericity_bonded 17.654 r_dihedral_angle_4_deg 14.329 r_dihedral_angle_3_deg 13.975 r_long_range_B_refined 7.343 r_long_range_B_other 7.269 r_dihedral_angle_1_deg 7.164 r_scangle_other 4.336 r_rigid_bond_restr 4.255 r_scbond_it 3.919 r_scbond_other 3.917 r_mcangle_it 3.51 r_mcangle_other 3.473 r_mcbond_it 2.903 r_mcbond_other 2.88 r_angle_refined_deg 2.245 r_angle_other_deg 1.979 r_chiral_restr 0.132 r_bond_refined_d 0.025 r_gen_planes_refined 0.012 r_bond_other_d 0.006 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1810 Nucleic Acid Atoms Solvent Atoms 420 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling PHASER phasing