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Human STK10 bound to dasatinib
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other STK10
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 277 40% PEG 300, 0.20M Ca(ac)2, 0.1M cacodylate pH 6.5
Crystal Properties Matthews coefficient Solvent content 2.7 54.48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 49.74 α = 90 b = 111.72 β = 90 c = 133.15 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2011-10-05 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.9795 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.3 85.58 99.9 0.1 0.997 37.2 4.3 16890
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.3 2.38 100 1.03 0.667 1.7 4.3 1643
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT STK10 2.3 85.58 16084 786 99.64 0.22146 0.21986 0.2245 0.25362 0.2509 RANDOM 52.702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.66 3.8 -3.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.131 r_dihedral_angle_4_deg 14.658 r_dihedral_angle_3_deg 14.21 r_long_range_B_refined 5.87 r_long_range_B_other 5.847 r_dihedral_angle_1_deg 5.622 r_scangle_other 3.66 r_mcangle_it 3.624 r_mcangle_other 3.623 r_mcbond_it 2.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.131 r_dihedral_angle_4_deg 14.658 r_dihedral_angle_3_deg 14.21 r_long_range_B_refined 5.87 r_long_range_B_other 5.847 r_dihedral_angle_1_deg 5.622 r_scangle_other 3.66 r_mcangle_it 3.624 r_mcangle_other 3.623 r_mcbond_it 2.18 r_mcbond_other 2.177 r_scbond_it 2.132 r_scbond_other 2.132 r_angle_refined_deg 1.18 r_angle_other_deg 0.902 r_chiral_restr 0.066 r_bond_refined_d 0.008 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2157 Nucleic Acid Atoms Solvent Atoms 84 Heterogen Atoms 34
Software Software Software Name Purpose REFMAC refinement Aimless data scaling PHASER phasing MOSFLM data reduction