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Crystal structure of maize chloroplastic photosynthetic NADP(+)-dependent malic enzyme
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 285 0.1 M KCl, 0.1 M sodium citrate pH 5.5, 34 % (v/v) pentaerythritol-propylate (5/4 PO/OH)
Crystal Properties Matthews coefficient Solvent content 2.57 52.14
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 135.961 α = 90 b = 147.155 β = 90 c = 261.615 γ = 90
Symmetry Space Group I 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2017-03-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-1 0.976254 ESRF ID23-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 48.88 100 0.06346 0.999 18.67 5.9 132077
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.279 99 0.4717 0.906 3.51 6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 48.88 125428 6725 99.47 0.1623 0.15971 0.1685 0.21056 0.2126 RANDOM 39.937
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.69 0.51 1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.02 r_dihedral_angle_4_deg 19.437 r_dihedral_angle_3_deg 15.962 r_long_range_B_other 8.376 r_long_range_B_refined 8.374 r_scangle_other 6.997 r_dihedral_angle_1_deg 6.605 r_scbond_it 4.564 r_scbond_other 4.563 r_mcangle_it 4.394
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.02 r_dihedral_angle_4_deg 19.437 r_dihedral_angle_3_deg 15.962 r_long_range_B_other 8.376 r_long_range_B_refined 8.374 r_scangle_other 6.997 r_dihedral_angle_1_deg 6.605 r_scbond_it 4.564 r_scbond_other 4.563 r_mcangle_it 4.394 r_mcangle_other 4.393 r_mcbond_it 3.231 r_mcbond_other 3.231 r_angle_refined_deg 1.837 r_angle_other_deg 1.077 r_chiral_restr 0.116 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 17295 Nucleic Acid Atoms Solvent Atoms 729 Heterogen Atoms 17
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing