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Structure of caprine serum albumin in P1 space group
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5ORI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 283 0,2M L-Proline, Hepes pH 7,5, 24% PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.44 49.61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 78.75 α = 90.01 b = 80.93 β = 75.9 c = 110.53 γ = 72.22
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors 2013-10-25 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 50 98.1 0.059 0.998 12.97 3.15 85355
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.6 0.703 0.596 1.98 3.11
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5ORI 2.5 40 83645 1708 98.15 0.19845 0.19749 0.24595 0.2539 RANDOM 64.673
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.6 -0.29 -1.21 -0.27 -0.57 -3.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.72 r_dihedral_angle_4_deg 22.977 r_dihedral_angle_3_deg 20.49 r_long_range_B_refined 12.345 r_mcangle_it 7.78 r_dihedral_angle_1_deg 7.653 r_scbond_it 6.222 r_mcbond_it 5.312 r_angle_refined_deg 2.147 r_chiral_restr 0.133
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.72 r_dihedral_angle_4_deg 22.977 r_dihedral_angle_3_deg 20.49 r_long_range_B_refined 12.345 r_mcangle_it 7.78 r_dihedral_angle_1_deg 7.653 r_scbond_it 6.222 r_mcbond_it 5.312 r_angle_refined_deg 2.147 r_chiral_restr 0.133 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 18511 Nucleic Acid Atoms Solvent Atoms 482 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing