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Structure of caprine serum albumin in orthorhombic crystal system
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4LUF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 293 Jeffamine ED2001, citric buffer pH 5.0, 0.02M BaCl2
Crystal Properties Matthews coefficient Solvent content 2.27 46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 42.27 α = 90 b = 66.96 β = 90 c = 213.29 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD mirrors 2014-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.2 0.9184 BESSY 14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 50 98.7 0.056 0.999 18.77 5.17 45413 -3 50
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 2.04 93.2 0.8 0.626 2.02 4.38
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4LUF 1.94 39.3 43138 2272 98.73 0.19143 0.18846 0.2483 0.2374 RANDOM 50.088
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.53 0.1 1.43
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.233 r_sphericity_bonded 24.515 r_dihedral_angle_4_deg 23.701 r_dihedral_angle_3_deg 16.671 r_rigid_bond_restr 9.341 r_long_range_B_refined 6.835 r_dihedral_angle_1_deg 6.786 r_scbond_it 6.57 r_mcangle_it 5.894 r_mcbond_it 5.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.233 r_sphericity_bonded 24.515 r_dihedral_angle_4_deg 23.701 r_dihedral_angle_3_deg 16.671 r_rigid_bond_restr 9.341 r_long_range_B_refined 6.835 r_dihedral_angle_1_deg 6.786 r_scbond_it 6.57 r_mcangle_it 5.894 r_mcbond_it 5.38 r_angle_refined_deg 2.035 r_chiral_restr 0.148 r_bond_refined_d 0.02 r_gen_planes_refined 0.011 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_it r_scangle_other r_long_range_B_other r_sphericity_free
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4643 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling MOLREP phasing