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XIAP in complex with small molecule
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 0.1M HEPES/NaOHpH=8, 2.9M NaCl
Crystal Properties Matthews coefficient Solvent content 4.52 72.79
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 99.38 α = 90 b = 99.38 β = 90 c = 106.733 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2013-07-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.97625 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.31 72.84 100 0.158 13.2 13.1 24134
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.31 72.84 22829 1188 99.98 0.21507 0.21342 0.2167 0.24631 0.2496 RANDOM 58.304
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.07 -0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.05 r_dihedral_angle_3_deg 15.421 r_dihedral_angle_4_deg 11.402 r_long_range_B_refined 7.826 r_long_range_B_other 7.791 r_dihedral_angle_1_deg 6.445 r_scbond_it 2.973 r_scbond_other 2.972 r_mcbond_it 2.51 r_mcbond_other 2.492
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.05 r_dihedral_angle_3_deg 15.421 r_dihedral_angle_4_deg 11.402 r_long_range_B_refined 7.826 r_long_range_B_other 7.791 r_dihedral_angle_1_deg 6.445 r_scbond_it 2.973 r_scbond_other 2.972 r_mcbond_it 2.51 r_mcbond_other 2.492 r_angle_refined_deg 1.325 r_angle_other_deg 0.969 r_chiral_restr 0.083 r_bond_refined_d 0.01 r_bond_other_d 0.002 r_gen_planes_refined 0.001 r_gen_planes_other r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcangle_it r_mcangle_other r_scangle_it r_scangle_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1740 Nucleic Acid Atoms Solvent Atoms 224 Heterogen Atoms 81
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing