☰ Navigation Tabs
A 3,6-anhydro-D-galactosidase produced by Zobellia galactanivorans. This is an exo-lytic enzyme that hydrolyzes terminal 3,6-anhydro-D-galactose from the non-reducing end of carrageenan oligosaccharides.
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 285 1:1 ratio of 0.14M Na/K-tartrate, 12% PEG 3350 with 9 mg/ml ZGAL_3152
Crystal Properties Matthews coefficient Solvent content 2.9 57.57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 222 α = 90 b = 107.5 β = 114 c = 165.8 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2013-09-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.97935 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 46.7 99.6 16.1 3.1 389746
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.7 46.7 368616 19548 99.57 0.14724 0.14572 0.1583 0.17571 0.1853 RANDOM 21.082
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.04 -0.16 0.13
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.361 r_dihedral_angle_4_deg 17.779 r_dihedral_angle_3_deg 13.377 r_dihedral_angle_1_deg 6.882 r_long_range_B_refined 6.175 r_long_range_B_other 6.175 r_scangle_other 4.703 r_scbond_it 3.229 r_scbond_other 3.229 r_mcangle_it 2.431
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.361 r_dihedral_angle_4_deg 17.779 r_dihedral_angle_3_deg 13.377 r_dihedral_angle_1_deg 6.882 r_long_range_B_refined 6.175 r_long_range_B_other 6.175 r_scangle_other 4.703 r_scbond_it 3.229 r_scbond_other 3.229 r_mcangle_it 2.431 r_mcangle_other 2.431 r_angle_refined_deg 2.289 r_mcbond_it 1.928 r_mcbond_other 1.927 r_angle_other_deg 1.008 r_chiral_restr 0.153 r_bond_refined_d 0.024 r_gen_planes_refined 0.013 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 20834 Nucleic Acid Atoms Solvent Atoms 2794 Heterogen Atoms 84
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELXCD phasing