☰ Navigation Tabs
Resting state copper nitrite reductase determined by serial femtosecond rotation crystallography
Serial Crystallography (SX)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OE1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 293.15 10% w/v PEG 550 MME, 10 mM ZnSO4, 100 mM MES buffer pH 6.5
Crystal Properties Matthews coefficient Solvent content 3.07 59.91
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 89.97 α = 90 b = 89.97 β = 90 c = 143.56 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX225-HS 2016-05-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 FREE ELECTRON LASER SACLA BEAMLINE BL3 1.242 SACLA BL3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 19.84 100 0.975 4.7 132.3 57138 26.1
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 100 0.502 47
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1oe1 1.6 19.84 54329 2816 99.94 0.18747 0.18542 0.1935 0.22596 0.2326 RANDOM 29.603
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.36 0.18 0.36 -1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.89 r_dihedral_angle_4_deg 17.902 r_dihedral_angle_3_deg 12.317 r_dihedral_angle_1_deg 7.473 r_long_range_B_refined 4.888 r_long_range_B_other 4.703 r_scangle_other 3.534 r_mcangle_other 2.575 r_mcangle_it 2.566 r_scbond_it 2.489
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.89 r_dihedral_angle_4_deg 17.902 r_dihedral_angle_3_deg 12.317 r_dihedral_angle_1_deg 7.473 r_long_range_B_refined 4.888 r_long_range_B_other 4.703 r_scangle_other 3.534 r_mcangle_other 2.575 r_mcangle_it 2.566 r_scbond_it 2.489 r_scbond_other 2.489 r_mcbond_it 2.029 r_mcbond_other 2.013 r_angle_refined_deg 1.758 r_angle_other_deg 1.013 r_chiral_restr 0.106 r_bond_refined_d 0.015 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2567 Nucleic Acid Atoms Solvent Atoms 386 Heterogen Atoms 42
Software Software Software Name Purpose CrystFEL data processing MOSFLM data processing MOLREP phasing REFMAC refinement