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CRYSTAL STRUCTURE OF RAT PEROXISOMAL MULTIFUNCTIONAL ENZYME TYPE-1 (RPMFE1) COMPLEXED WITH WITH 3S-HYDROXY-DECANOYL-COA AND 3-KETO-DECANOYL-COA
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2X58
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 6 295 100MM MES PH 6.0, 150MM
AMMONIUM SULPHATE, 15% W/V PEG4000
Crystal Properties Matthews coefficient Solvent content 2.81 56.24
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.96 α = 90 b = 125.08 β = 90 c = 223.53 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-11-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 0.93928 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.49 47.9 99.2 0.06 0.029 16.6 4.4 64401
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.49 2.62 96.1 0.28 0.158 4.2 4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2X58 2.49 47.9 60931 3208 98.73 0.19446 0.19271 0.22831 0.2225 RANDOM 53.337
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.38 -2.45 2.82
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.622 r_dihedral_angle_4_deg 18.859 r_dihedral_angle_3_deg 16.153 r_dihedral_angle_1_deg 5.924 r_long_range_B_refined 4.673 r_long_range_B_other 4.673 r_scangle_it 2.234 r_scangle_other 2.234 r_mcangle_it 2.186 r_mcangle_other 2.186
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.622 r_dihedral_angle_4_deg 18.859 r_dihedral_angle_3_deg 16.153 r_dihedral_angle_1_deg 5.924 r_long_range_B_refined 4.673 r_long_range_B_other 4.673 r_scangle_it 2.234 r_scangle_other 2.234 r_mcangle_it 2.186 r_mcangle_other 2.186 r_chiral_restr_other 1.975 r_angle_refined_deg 1.451 r_scbond_it 1.298 r_scbond_other 1.297 r_mcbond_other 1.24 r_mcbond_it 1.239 r_angle_other_deg 1.039 r_nbd_other 0.239 r_symmetry_nbd_refined 0.194 r_nbd_refined 0.191 r_nbtor_refined 0.167 r_symmetry_xyhbond_nbd_refined 0.151 r_symmetry_nbd_other 0.144 r_xyhbond_nbd_refined 0.126 r_ncsr_local_group_1 0.087 r_chiral_restr 0.082 r_symmetry_nbtor_other 0.074 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11076 Nucleic Acid Atoms Solvent Atoms 282 Heterogen Atoms 228
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling REFMAC phasing