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Crystal structure of human SHIP2 Phosphatase-C2 double mutant F593D/L597D
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 0.1 M PCB (sodium propionate, sodium cacodylate, and BIS-TRIS propane; 2:1:2 molar ratio) pH 7, 25% PEG 1500
Crystal Properties Matthews coefficient Solvent content 2.21 44.35
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 44.035 α = 90 b = 81.118 β = 92.85 c = 128.9 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.873 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.94 81.12 100 0.055 0.998 11.8 6.8 63790
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.94 1.99 100 0.459 0.787 2.3 6.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.94 81.12 63790 3341 99.96 0.19155 0.18957 0.198 0.22872 0.2372 RANDOM 26.809
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.44 -0.31 1.26 -1.66
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.461 r_dihedral_angle_4_deg 16.707 r_dihedral_angle_3_deg 13.637 r_dihedral_angle_1_deg 6.321 r_long_range_B_refined 3.334 r_long_range_B_other 3.31 r_mcangle_it 1.586 r_mcangle_other 1.586 r_scangle_other 1.504 r_angle_refined_deg 1.354
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.461 r_dihedral_angle_4_deg 16.707 r_dihedral_angle_3_deg 13.637 r_dihedral_angle_1_deg 6.321 r_long_range_B_refined 3.334 r_long_range_B_other 3.31 r_mcangle_it 1.586 r_mcangle_other 1.586 r_scangle_other 1.504 r_angle_refined_deg 1.354 r_angle_other_deg 0.918 r_mcbond_it 0.897 r_mcbond_other 0.897 r_scbond_it 0.881 r_scbond_other 0.881 r_chiral_restr 0.082 r_bond_refined_d 0.01 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6891 Nucleic Acid Atoms Solvent Atoms 288 Heterogen Atoms 39
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing