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Crystal structure of human SHIP2 Phosphatase-C2 D607A mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 0.1 M Bis-Tris propane, pH 7.0, 0.4 M KSCN, 20% (w/v) PEG3350
Crystal Properties Matthews coefficient Solvent content 2.59 52.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 137.065 α = 90 b = 177.143 β = 90 c = 177.371 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2015-07-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.872600 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 49.17 100 0.055 0.996 13.4 9 119204
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.7 100 0.467 0.7 2.2 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.65 49.17 119204 6370 99.94 0.20796 0.206 0.2085 0.24463 0.2431 RANDOM 60.007
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.5 -1.11 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.461 r_dihedral_angle_4_deg 16.996 r_dihedral_angle_3_deg 13.247 r_dihedral_angle_1_deg 6.279 r_long_range_B_refined 4.607 r_long_range_B_other 4.607 r_mcangle_it 2.422 r_mcangle_other 2.422 r_angle_other_deg 2.02 r_scangle_other 1.849
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.461 r_dihedral_angle_4_deg 16.996 r_dihedral_angle_3_deg 13.247 r_dihedral_angle_1_deg 6.279 r_long_range_B_refined 4.607 r_long_range_B_other 4.607 r_mcangle_it 2.422 r_mcangle_other 2.422 r_angle_other_deg 2.02 r_scangle_other 1.849 r_mcbond_it 1.321 r_mcbond_other 1.321 r_angle_refined_deg 1.267 r_scbond_it 0.996 r_scbond_other 0.996 r_chiral_restr 0.072 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 27549 Nucleic Acid Atoms Solvent Atoms 284 Heterogen Atoms 237
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing