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Cu nitrite reductase serial data at varying temperatures RT 0.30MGy
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5I6K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 100 mM sodium citrate at pH 5.0 and ~1.7 M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 2.03 39.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 96.249 α = 90 b = 96.249 β = 90 c = 96.249 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 298 PIXEL PSI PILATUS 6M 2015-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.8 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.91 48.13 99.6 0.109 0.99 4.4 3.3 23248
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.91 1.96 97.5 0.487 0.56 1.4 3.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5I6K 1.91 48.12 22011 1110 99 0.18826 0.1862 0.1939 0.22958 0.2377 RANDOM 22.128
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.386 r_dihedral_angle_4_deg 19.623 r_dihedral_angle_3_deg 13.711 r_dihedral_angle_1_deg 7.472 r_long_range_B_refined 5.177 r_long_range_B_other 5.123 r_scangle_other 3.158 r_mcangle_it 2.204 r_mcangle_other 2.204 r_scbond_it 1.935
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.386 r_dihedral_angle_4_deg 19.623 r_dihedral_angle_3_deg 13.711 r_dihedral_angle_1_deg 7.472 r_long_range_B_refined 5.177 r_long_range_B_other 5.123 r_scangle_other 3.158 r_mcangle_it 2.204 r_mcangle_other 2.204 r_scbond_it 1.935 r_scbond_other 1.889 r_angle_refined_deg 1.676 r_mcbond_it 1.397 r_mcbond_other 1.389 r_angle_other_deg 1.007 r_chiral_restr 0.091 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2566 Nucleic Acid Atoms Solvent Atoms 122 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement DIALS data collection XDS data reduction Aimless data scaling REFMAC phasing