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Cu nitrite reductase serial data at varying temperatures 190K 0.48MGy
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5I6K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 100 mM sodium citrate at pH 5.0 and ~1.7 M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 1.95 36.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.94 α = 90 b = 94.94 β = 90 c = 94.94 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 190 PIXEL DECTRIS PILATUS 6M-F 2015-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.99 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.27 42.46 99.9 0.033 0.99 12.2 6.4 75137 8.6
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.27 1.29 99.9 0.697 0.36 1.1 6.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5I6K 1.27 42.46 71387 3707 99.98 0.1256 0.12374 0.124 0.1609 0.1619 RANDOM 17.707
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.301 r_sphericity_free 24.089 r_dihedral_angle_4_deg 18.4 r_dihedral_angle_3_deg 11.693 r_sphericity_bonded 8.92 r_dihedral_angle_1_deg 7.541 r_rigid_bond_restr 6.753 r_long_range_B_refined 4.215 r_angle_other_deg 3.911 r_long_range_B_other 3.799
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.301 r_sphericity_free 24.089 r_dihedral_angle_4_deg 18.4 r_dihedral_angle_3_deg 11.693 r_sphericity_bonded 8.92 r_dihedral_angle_1_deg 7.541 r_rigid_bond_restr 6.753 r_long_range_B_refined 4.215 r_angle_other_deg 3.911 r_long_range_B_other 3.799 r_scangle_other 3.452 r_scbond_it 2.803 r_scbond_other 2.782 r_mcangle_it 2.152 r_mcangle_other 2.151 r_mcbond_it 1.736 r_mcbond_other 1.701 r_angle_refined_deg 1.671 r_chiral_restr 0.104 r_bond_refined_d 0.013 r_gen_planes_other 0.011 r_gen_planes_refined 0.008 r_bond_other_d r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2581 Nucleic Acid Atoms Solvent Atoms 330 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing