☰ Navigation Tabs
Cu nitrite reductase serial data at varying temperatures
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5I6K
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 100 mM sodium citrate at pH 5.0 and ~1.7 M ammonium sulphate
Crystal Properties Matthews coefficient Solvent content 1.95 36.84
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 94.94 α = 90 b = 94.94 β = 90 c = 94.94 γ = 90
Symmetry Space Group P 21 3
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 190 PIXEL DECTRIS PILATUS 6M-F 2015-12-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.99 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.08 42.46 99.4 0.029 0.99 13.7 5.9 120835 8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.08 1.1 93.9 0.623 0.32 1.1 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5I6K 1.08 42.46 114845 5949 99.34 0.11726 0.11595 0.1168 0.14327 0.1437 RANDOM 12.26
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.109 r_sphericity_free 20.261 r_dihedral_angle_4_deg 18.613 r_dihedral_angle_3_deg 11.763 r_dihedral_angle_1_deg 7.779 r_sphericity_bonded 6.28 r_rigid_bond_restr 4.132 r_long_range_B_refined 2.905 r_long_range_B_other 2.905 r_scangle_other 2.456
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.109 r_sphericity_free 20.261 r_dihedral_angle_4_deg 18.613 r_dihedral_angle_3_deg 11.763 r_dihedral_angle_1_deg 7.779 r_sphericity_bonded 6.28 r_rigid_bond_restr 4.132 r_long_range_B_refined 2.905 r_long_range_B_other 2.905 r_scangle_other 2.456 r_mcangle_other 2.416 r_mcbond_it 2.402 r_mcangle_it 2.035 r_angle_refined_deg 1.814 r_scbond_other 1.807 r_scbond_it 1.805 r_angle_other_deg 1.671 r_mcbond_other 1.036 r_chiral_restr 0.118 r_bond_refined_d 0.015 r_gen_planes_refined 0.011 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2581 Nucleic Acid Atoms Solvent Atoms 436 Heterogen Atoms 61
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling REFMAC phasing