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Im polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamides studies
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D 1H-1H NOESY 1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA8 90% H2O/10% D2O 100 phosphate mM 7.4 1 atm 298 Bruker AVANCE 600 2 2D 1H-1H NOESY 1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA8 100% D2O 100 phosphate mM 7.4 1 atm 298 Bruker AVANCE 600 3 2D DQF-COSY 1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA8 100% D2O 100 phosphate mM 7.4 1 atm 298 Bruker AVANCE 600 4 2D 1H-1H TOCSY 1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA8 100% D2O 100 phosphate mM 7.4 1 atm 298 Bruker AVANCE 600 5 2D 1H-13C HSQC 1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA8 100% D2O 100 phosphate mM 7.4 1 atm 298 Bruker AVANCE 600 6 2D 1H-31P COSY 1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA8 100% D2O 100 phosphate mM 7.4 1 atm 298 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software molecular dynamics Amber matrix relaxation MARDIGRAS
NMR Ensemble Information Conformer Selection Criteria clustering Conformers Calculated Total Number 2000 Conformers Submitted Total Number 10
Computation: NMR Software # Classification Version Software Name Author 1 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 2 structure calculation Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 3 chemical shift assignment Sparky Goddard 4 processing TopSpin Bruker Biospin 5 structure calculation MARDIGRAS N. Ulyanov