☰ Navigation Tabs
NtMe polyamide in complex with 5'CGATGTACATCG3'- hairpin polyamides studies
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 2 2D DQF-COSY 1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA6 100% D2O 100 Phosphate mM 7.4 1 atm 298 Bruker AVANCE 600 3 2D 1H-1H TOCSY 1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA6 100% D2O 100 Phosphate mM 7.4 1 atm 298 Bruker AVANCE 600 4 2D 1H-13C HSQC 1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA6 100% D2O 100 Phosphate mM 7.4 1 atm 298 Bruker AVANCE 600 5 1H-31P COSY 1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA6 100% D2O 100 Phosphate mM 7.4 1 atm 298 Bruker AVANCE 600 6 2D 1H-1H NOESY 1.3 mM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA6 100% D2O 100 Phosphate mM 7.4 1 atm 298 Bruker AVANCE 600 7 2D 1H-1H NOESY 1.3 nM DNA (5'-D(*CP*GP*AP*TP*GP*TP*AP*CP*AP*TP*CP*G)-3'), 1.3 mM PA6 90% H2O/10% D2O 100 Phosphate mM 7.4 1 atm 298 Bruker AVANCE 600
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE 600
NMR Refinement Method Details Software molecular dynamics Amber
NMR Ensemble Information Conformer Selection Criteria na Conformers Calculated Total Number 10 Conformers Submitted Total Number 10 Representative Model 1 (na)
Computation: NMR Software # Classification Version Software Name Author 1 processing TopSpin Bruker Biospin 5 chemical shift assignment Sparky Goddard 2 structure calculation MARDIGRAS N. Ulyanov 3 structure calculation Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman 4 refinement Amber Case, Darden, Cheatham III, Simmerling, Wang, Duke, Luo, ... and Kollman