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Periplasmic binding protein CeuE complexed with a synthetic catalyst
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 9 293 0.1M succinic acid, sodium dihydrogen phosphate,
glycine. 25% PEG1500
Crystal Properties Matthews coefficient Solvent content 2.4 49
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.692 α = 87.38 b = 62.759 β = 76.9 c = 68.195 γ = 79.27
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 R CdTe 300K 2017-04-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9762 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 66.42 97.9 0.113 0.997 7.4 5.3 83133
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 100 1.622 0.502 6.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.9 66.42 70601 3437 99.59 0.1789 0.1766 0.1863 0.2232 0.226 RANDOM 44.1571
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.44 -0.43 0.27 2.29 0.23 -0.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.633 r_dihedral_angle_3_deg 16.256 r_dihedral_angle_4_deg 16.119 r_dihedral_angle_1_deg 6.608 r_mcangle_it 5.128 r_mcbond_it 3.828 r_mcbond_other 3.828 r_angle_other_deg 3.71 r_angle_refined_deg 1.851 r_chiral_restr 0.118
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.633 r_dihedral_angle_3_deg 16.256 r_dihedral_angle_4_deg 16.119 r_dihedral_angle_1_deg 6.608 r_mcangle_it 5.128 r_mcbond_it 3.828 r_mcbond_other 3.828 r_angle_other_deg 3.71 r_angle_refined_deg 1.851 r_chiral_restr 0.118 r_bond_refined_d 0.018 r_gen_planes_other 0.012 r_gen_planes_refined 0.009 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6729 Nucleic Acid Atoms Solvent Atoms 117 Heterogen Atoms 164
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling MOLREP phasing