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Avr2 effector protein from the fungal plant pathogen Fusarium oxysporum
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 0.1 M MES, pH 6.5; 25% (w/v) PEG 8K
Crystal Properties Matthews coefficient Solvent content 2.3 46.45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 33.41 α = 90 b = 51.73 β = 90 c = 74.79 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2017-01-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9168 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.1 42.54 99.8 26.1 12.8 53312
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.1 40 50569 2672 99.65 0.14026 0.13876 0.1388 0.16899 0.1695 RANDOM 12.746
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.61 0.4 0.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.801 r_sphericity_free 22.702 r_dihedral_angle_4_deg 17.519 r_sphericity_bonded 10.842 r_dihedral_angle_3_deg 10.309 r_dihedral_angle_1_deg 7.436 r_long_range_B_refined 3.281 r_long_range_B_other 3.003 r_scangle_other 2.458 r_rigid_bond_restr 2.233
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.801 r_sphericity_free 22.702 r_dihedral_angle_4_deg 17.519 r_sphericity_bonded 10.842 r_dihedral_angle_3_deg 10.309 r_dihedral_angle_1_deg 7.436 r_long_range_B_refined 3.281 r_long_range_B_other 3.003 r_scangle_other 2.458 r_rigid_bond_restr 2.233 r_scbond_it 2.07 r_scbond_other 2.049 r_angle_refined_deg 1.823 r_mcangle_it 1.511 r_mcangle_other 1.51 r_mcbond_it 1.205 r_angle_other_deg 1.194 r_mcbond_other 1.173 r_chiral_restr 0.11 r_bond_refined_d 0.014 r_gen_planes_refined 0.011 r_bond_other_d 0.003 r_gen_planes_other 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 966 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 20
Software Software Software Name Purpose REFMAC refinement xia2 data reduction PHASER phasing