☰ Navigation Tabs
Ene-reductase (ER/OYE) from Ralstonia (Cupriavidus) metallidurans
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3GR7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 290 0.2 M ammonium citrate tribasic pH 7, 20% (w/v) PEG3350
Crystal Properties Matthews coefficient Solvent content 2.4 48.85
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 77.97 α = 90 b = 95.04 β = 90 c = 208.68 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 93 CCD MARRESEARCH 2014-03-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.95372 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 35.54 97.4 0.098 0.106 0.039 0.998 11.2 7 165966
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 97 0.486 0.525 0.196 0.941 6.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3GR7 1.7 35.54 157658 8226 97.21 0.1707 0.1693 0.1801 0.1969 0.2052 RANDOM 14.154
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 1.16 -1.14
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.836 r_dihedral_angle_4_deg 17.921 r_dihedral_angle_3_deg 12.097 r_dihedral_angle_1_deg 6.066 r_angle_refined_deg 1.6 r_angle_other_deg 0.98 r_chiral_restr 0.097 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.006
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.836 r_dihedral_angle_4_deg 17.921 r_dihedral_angle_3_deg 12.097 r_dihedral_angle_1_deg 6.066 r_angle_refined_deg 1.6 r_angle_other_deg 0.98 r_chiral_restr 0.097 r_bond_refined_d 0.013 r_gen_planes_refined 0.009 r_bond_other_d 0.006 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11288 Nucleic Acid Atoms Solvent Atoms 1185 Heterogen Atoms 96
Software Software Software Name Purpose MOSFLM data reduction Aimless data scaling PHASER phasing REFMAC refinement PDB_EXTRACT data extraction