☰ Navigation Tabs
Crystal structure of ACPA E4 in complex with CEP1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4M1Q 4m1q, 3lmj experimental model PDB 3LMJ 4m1q, 3lmj
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 20% PEG3350, 0.2M ammonium citrate
Crystal Properties Matthews coefficient Solvent content 2.07 40.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 39.296 α = 90 b = 101.048 β = 101.03 c = 52.109 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-02-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9686 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 45.63 98.4 0.112 0.089 0.961 6.7 3.7 51683 12.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.63 98.4 0.661 0.538 0.498 1.8 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4m1q, 3lmj 1.6 45.63 49002 2623 98.25 0.18456 0.1827 0.1937 0.21809 0.2236 RANDOM 16.425
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.31 0.39 -0.63 0.15
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.313 r_dihedral_angle_4_deg 22.263 r_dihedral_angle_1_deg 13.847 r_dihedral_angle_3_deg 10.52 r_long_range_B_refined 4.632 r_long_range_B_other 4.365 r_scangle_other 2.219 r_angle_other_deg 2 r_mcangle_it 1.89 r_mcangle_other 1.89
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.313 r_dihedral_angle_4_deg 22.263 r_dihedral_angle_1_deg 13.847 r_dihedral_angle_3_deg 10.52 r_long_range_B_refined 4.632 r_long_range_B_other 4.365 r_scangle_other 2.219 r_angle_other_deg 2 r_mcangle_it 1.89 r_mcangle_other 1.89 r_angle_refined_deg 1.473 r_scbond_it 1.376 r_scbond_other 1.376 r_mcbond_it 1.104 r_mcbond_other 1.101 r_chiral_restr 0.089 r_bond_refined_d 0.01 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3427 Nucleic Acid Atoms Solvent Atoms 456 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction Aimless data scaling PHASER phasing