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Crystal structure of CD32b (Fc Gamma Receptor IIb) in complex with Human IgG1 Fab fragment (6G08)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 293 0.1M MES, 0.01M Zinc Chloride, 20% PEG 6000, pH 6.0
Crystal Properties Matthews coefficient Solvent content 2.79 55.94
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.23 α = 90 b = 75.02 β = 90 c = 134.95 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2013-06-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.98 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 134.95 99.5 0.134 0.99 9.6 5.5 23884
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.5 134.95 23884 1281 99.25 0.19585 0.19229 0.1997 0.26077 0.2554 RANDOM 48.578
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -3.81 3.17 0.64
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.293 r_dihedral_angle_4_deg 17.558 r_dihedral_angle_3_deg 16.704 r_dihedral_angle_1_deg 8.337 r_long_range_B_other 5.248 r_long_range_B_refined 5.247 r_scangle_other 2.555 r_mcangle_it 2.286 r_mcangle_other 2.286 r_angle_refined_deg 2.178
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.293 r_dihedral_angle_4_deg 17.558 r_dihedral_angle_3_deg 16.704 r_dihedral_angle_1_deg 8.337 r_long_range_B_other 5.248 r_long_range_B_refined 5.247 r_scangle_other 2.555 r_mcangle_it 2.286 r_mcangle_other 2.286 r_angle_refined_deg 2.178 r_scbond_it 1.777 r_scbond_other 1.777 r_mcbond_it 1.343 r_mcbond_other 1.331 r_angle_other_deg 1.154 r_chiral_restr 0.119 r_bond_refined_d 0.021 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4513 Nucleic Acid Atoms Solvent Atoms 105 Heterogen Atoms 59
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling MOLREP phasing