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Structure of E. coli superoxide oxidase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293 HEPES, glycerol, PEG 2000 MME, magnesium chloride
Crystal Properties Matthews coefficient Solvent content 3.47 64.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.046 α = 90 b = 91.102 β = 90 c = 97.923 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 80 PIXEL PSI PILATUS 6M 2012-09-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.97973 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.97 20 99.7 0.103 14.38 13 21862
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.97 2.09 99.1 1.212 2 13.2 3417
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.97 19.87 20754 1093 99.81 0.18845 0.18758 0.1874 0.20437 0.2049 RANDOM 52.34
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.39 -2.12 -1.27
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.819 r_dihedral_angle_3_deg 15.198 r_dihedral_angle_4_deg 11.154 r_long_range_B_refined 5.591 r_long_range_B_other 5.587 r_dihedral_angle_1_deg 5.425 r_scangle_other 3.776 r_scbond_it 2.578 r_scbond_other 2.578 r_mcangle_it 2.32
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.819 r_dihedral_angle_3_deg 15.198 r_dihedral_angle_4_deg 11.154 r_long_range_B_refined 5.591 r_long_range_B_other 5.587 r_dihedral_angle_1_deg 5.425 r_scangle_other 3.776 r_scbond_it 2.578 r_scbond_other 2.578 r_mcangle_it 2.32 r_mcangle_other 2.319 r_angle_refined_deg 1.829 r_mcbond_other 1.599 r_mcbond_it 1.598 r_angle_other_deg 1.012 r_chiral_restr 0.141 r_bond_refined_d 0.018 r_gen_planes_refined 0.011 r_gen_planes_other 0.004 r_bond_other_d 0.003 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1414 Nucleic Acid Atoms Solvent Atoms 25 Heterogen Atoms 132
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling SHELXDE phasing