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low resolution structure of the p34ct/p44ct minimal complex
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 5NUS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293.15 15% PEG 20,000
100 mM MES pH 6.5
Crystal Properties Matthews coefficient Solvent content 3.27 62.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 138.212 α = 90 b = 138.212 β = 90 c = 95.235 γ = 120
Symmetry Space Group P 63 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2013-05-11 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID23-2 0.8726 ESRF ID23-2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.7 45.2 99.9 0.2 9.5 8.1 6120
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 5NUS 3.7 45.2 5828 278 99.84 0.19843 0.19616 0.1997 0.24623 0.2434 RANDOM 152.72
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.5 1.25 2.5 -8.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.133 r_long_range_B_refined 20.926 r_long_range_B_other 20.925 r_dihedral_angle_3_deg 17.339 r_mcangle_it 16.157 r_mcangle_other 16.156 r_scangle_other 15.268 r_dihedral_angle_4_deg 15.08 r_mcbond_it 10.352 r_mcbond_other 10.338
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.133 r_long_range_B_refined 20.926 r_long_range_B_other 20.925 r_dihedral_angle_3_deg 17.339 r_mcangle_it 16.157 r_mcangle_other 16.156 r_scangle_other 15.268 r_dihedral_angle_4_deg 15.08 r_mcbond_it 10.352 r_mcbond_other 10.338 r_scbond_it 9.755 r_scbond_other 9.751 r_dihedral_angle_1_deg 5.612 r_angle_refined_deg 1.61 r_angle_other_deg 1.107 r_chiral_restr 0.109 r_bond_refined_d 0.011 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2079 Nucleic Acid Atoms Solvent Atoms 1 Heterogen Atoms 2
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing