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The Fk1 domain of FKBP51 in complex with (1S,5S,6R)-10-((3,5-dichlorophenyl)sulfonyl)-5-(hydroxymethyl)-3-(pyridin-2-ylmethyl)-3,10-diazabicyclo[4.3.1]decan-2-one
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3O5Q pdbid 3O5Q
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 293 30 % PEG-3350, 0.2 M NH4-acetate and 0.1 M HEPES-NaOH pH 7.5
Crystal Properties Matthews coefficient Solvent content 2.32 47.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.819 α = 90 b = 54.915 β = 90 c = 56.745 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2015-02-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.97857 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Rrim I (All) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 0.94 39.462 95.4 0.04 0.045 0.021 17.6 3.9 68012
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Rrim I (All) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1 1.05 74.7 0.292 0.292 0.362 0.208 2.6 2.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdbid 3O5Q 1 30 64500 3434 95.36 0.1198 0.119 0.1195 0.1356 0.1363 RANDOM 14.554
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.45 -0.2 0.66
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 29.378 r_dihedral_angle_2_deg 27.729 r_dihedral_angle_4_deg 23.861 r_dihedral_angle_3_deg 14.616 r_sphericity_bonded 10.37 r_dihedral_angle_1_deg 6.958 r_rigid_bond_restr 2.989 r_angle_refined_deg 1.79 r_angle_other_deg 0.969 r_chiral_restr 0.175
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 29.378 r_dihedral_angle_2_deg 27.729 r_dihedral_angle_4_deg 23.861 r_dihedral_angle_3_deg 14.616 r_sphericity_bonded 10.37 r_dihedral_angle_1_deg 6.958 r_rigid_bond_restr 2.989 r_angle_refined_deg 1.79 r_angle_other_deg 0.969 r_chiral_restr 0.175 r_bond_refined_d 0.014 r_gen_planes_refined 0.008 r_bond_other_d 0.003 r_gen_planes_other 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 982 Nucleic Acid Atoms Solvent Atoms 263 Heterogen Atoms 33
Software Software Software Name Purpose SCALA data scaling REFMAC refinement PDB_EXTRACT data extraction TRUNCATE data scaling XDS data reduction