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THE PERIPLASMIC BINDING PROTEIN CEUE OF CAMPYLOBACTER JEJUNI BINDS THE IRON(III) COMPLEX OF Azotochelin
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3ZKW
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 BATCH MODE 7.5 291 0.2M NaF 20% PEG3350
Fe-Azotochelin stock solution
Crystal Properties Matthews coefficient Solvent content 2.5 50.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.139 α = 82.71 b = 63.41 β = 76.36 c = 67.674 γ = 79.03
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-01-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04 0.9795 Diamond I04
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 65.52 99.1 0.055 0.998 13.3 1.8 84430
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.83 97.9 0.39 0.589 1 5.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3zkw 1.8 65.52 84411 4314 99.09 0.207 0.2047 0.2117 0.251 0.2542 RANDOM 39.161
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.05 -1.05 0.91 -0.29 2.39 2.29
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.792 r_dihedral_angle_3_deg 16.339 r_dihedral_angle_4_deg 15.347 r_dihedral_angle_1_deg 6.613 r_mcangle_it 4.62 r_angle_other_deg 3.769 r_mcbond_it 3.493 r_mcbond_other 3.493 r_angle_refined_deg 1.959 r_chiral_restr 0.122
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.792 r_dihedral_angle_3_deg 16.339 r_dihedral_angle_4_deg 15.347 r_dihedral_angle_1_deg 6.613 r_mcangle_it 4.62 r_angle_other_deg 3.769 r_mcbond_it 3.493 r_mcbond_other 3.493 r_angle_refined_deg 1.959 r_chiral_restr 0.122 r_gen_planes_other 0.024 r_bond_refined_d 0.019 r_gen_planes_refined 0.01 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6729 Nucleic Acid Atoms Solvent Atoms 150 Heterogen Atoms 62
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction Aimless data scaling MOLREP phasing