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Crystal structure of transcription factor IIB Mvu mini-intein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 294 calcium chloride, PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.06 40.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 108.183 α = 90 b = 67.245 β = 102.43 c = 51.226 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2015-06-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE MASSIF-3 0.96770 ESRF MASSIF-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 56.7 99.5 0.083 13.3 7.6 12418
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.67 96.7 1.011 1.9 7.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 56.7 11837 580 99.49 0.22444 0.22162 0.2237 0.27847 0.2833 RANDOM 81.158
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.82 -0.47 2.03 -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.352 r_dihedral_angle_3_deg 22.089 r_dihedral_angle_4_deg 19.284 r_long_range_B_refined 8.835 r_long_range_B_other 8.819 r_dihedral_angle_1_deg 8.613 r_scangle_other 5.033 r_mcangle_it 4.75 r_mcangle_other 4.749 r_scbond_it 2.996
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.352 r_dihedral_angle_3_deg 22.089 r_dihedral_angle_4_deg 19.284 r_long_range_B_refined 8.835 r_long_range_B_other 8.819 r_dihedral_angle_1_deg 8.613 r_scangle_other 5.033 r_mcangle_it 4.75 r_mcangle_other 4.749 r_scbond_it 2.996 r_scbond_other 2.993 r_mcbond_it 2.922 r_mcbond_other 2.922 r_angle_refined_deg 1.957 r_angle_other_deg 1.101 r_chiral_restr 0.124 r_bond_refined_d 0.018 r_gen_planes_refined 0.009 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2757 Nucleic Acid Atoms Solvent Atoms 16 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement XDS data reduction XDS data scaling PHENIX phasing MR-Rosetta phasing