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Crystal Structure of the Pseudomonas functional amyloid secretion protein FapF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 293 0.05 - 0.1 M sodium citrate, 0.1 M sodium chloride, 20-30 % PEG 400
Crystal Properties Matthews coefficient Solvent content 3.24 62.01
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 143.26 α = 90 b = 124.731 β = 96.29 c = 80.359 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2015-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9798 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 29.38 99.5 0.059 10.8 3.4 164859 48100
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 97.8 0.4 2.1 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.5 2.64 46008 2467 99.81 0.22343 0.22151 0.2342 0.25928 RANDOM 44.693
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.8 0.33 -0.92 -3.85
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.529 r_dihedral_angle_4_deg 18.862 r_dihedral_angle_3_deg 14.702 r_long_range_B_refined 8.404 r_long_range_B_other 8.386 r_dihedral_angle_1_deg 6.787 r_scangle_other 5.969 r_mcangle_other 4.511 r_mcangle_it 4.51 r_scbond_it 3.818
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.529 r_dihedral_angle_4_deg 18.862 r_dihedral_angle_3_deg 14.702 r_long_range_B_refined 8.404 r_long_range_B_other 8.386 r_dihedral_angle_1_deg 6.787 r_scangle_other 5.969 r_mcangle_other 4.511 r_mcangle_it 4.51 r_scbond_it 3.818 r_scbond_other 3.817 r_mcbond_it 2.935 r_mcbond_other 2.932 r_angle_refined_deg 1.736 r_angle_other_deg 1.522 r_chiral_restr 0.089 r_bond_refined_d 0.013 r_gen_planes_refined 0.008 r_bond_other_d 0.007 r_gen_planes_other 0.006 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6580 Nucleic Acid Atoms Solvent Atoms 229 Heterogen Atoms 199
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling SHELXD phasing