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Glycogen Phosphorylase b in complex with 29a
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SMALL TUBES 6.8 289 10 mM BES buffer
Crystal Properties Matthews coefficient Solvent content 2.43 49.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 127.862 α = 90 b = 127.862 β = 90 c = 115.731 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 293 CCD AGILENT ATLAS CCD 2017-02-28 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SEALED TUBE OXFORD DIFFRACTION NOVA 1.5419
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.45 13.91 94.2 0.13 17.5 10.1 33526
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.45 2.55 84.9 0.775 2.9 7.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT 2.45 13.91 31822 1678 93.46 0.1462 0.14405 0.156 0.18706 0.1932 RANDOM 28.227
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.59 0.59 -1.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.493 r_dihedral_angle_4_deg 18.233 r_dihedral_angle_3_deg 13.91 r_long_range_B_refined 6.19 r_long_range_B_other 6.19 r_dihedral_angle_1_deg 6.005 r_scangle_other 4.849 r_mcangle_it 3.162 r_mcangle_other 3.162 r_scbond_it 3.102
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.493 r_dihedral_angle_4_deg 18.233 r_dihedral_angle_3_deg 13.91 r_long_range_B_refined 6.19 r_long_range_B_other 6.19 r_dihedral_angle_1_deg 6.005 r_scangle_other 4.849 r_mcangle_it 3.162 r_mcangle_other 3.162 r_scbond_it 3.102 r_scbond_other 3.101 r_mcbond_it 2.024 r_mcbond_other 2.024 r_angle_refined_deg 1.313 r_angle_other_deg 0.937 r_chiral_restr 0.074 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6590 Nucleic Acid Atoms Solvent Atoms 238 Heterogen Atoms 60
Software Software Software Name Purpose REFMAC refinement CrysalisPro data reduction Aimless data scaling