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Structure of Latex Clearing Protein LCP in the open state with bound imidazole
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 293.15 4 % (w/v) PEG 4000, 0.2 M Malate/Imidazole
Crystal Properties Matthews coefficient Solvent content 2.29 46.28
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 56.758 α = 85.43 b = 62.796 β = 66.06 c = 64.416 γ = 74.16
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2015-06-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 1.00002 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.48 60.37 90 0.086 0.053 0.994 8.1 3.6 117382
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.48 1.51 89.2 0.358 0.73 2.1 3.7 5807
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.48 60.37 111539 5840 90.02 0.16698 0.16584 0.1744 0.18857 0.1972 RANDOM 23.156
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.14 -0.22 0.15 -0.21 0.07 0.07
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.251 r_dihedral_angle_4_deg 18.427 r_dihedral_angle_3_deg 13.542 r_long_range_B_other 5.45 r_long_range_B_refined 5.449 r_dihedral_angle_1_deg 5.193 r_scangle_other 3.747 r_mcangle_it 2.691 r_mcangle_other 2.69 r_scbond_it 2.4
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.251 r_dihedral_angle_4_deg 18.427 r_dihedral_angle_3_deg 13.542 r_long_range_B_other 5.45 r_long_range_B_refined 5.449 r_dihedral_angle_1_deg 5.193 r_scangle_other 3.747 r_mcangle_it 2.691 r_mcangle_other 2.69 r_scbond_it 2.4 r_scbond_other 2.396 r_angle_refined_deg 2.04 r_mcbond_it 1.686 r_mcbond_other 1.686 r_angle_other_deg 1.106 r_chiral_restr 0.139 r_bond_refined_d 0.021 r_gen_planes_refined 0.011 r_gen_planes_other 0.003 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5737 Nucleic Acid Atoms Solvent Atoms 384 Heterogen Atoms 126
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing