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Crystal structure of dehydrogenase domain of Cylindrospermum stagnale NADPH-Oxidase 5 (NOX5)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 EVAPORATION 6.5 293 60 mM Ca-acetate, 80 mM NaCacodylate pH 6.5, 12-16% PEG 8000, 20% glycerol
Crystal Properties Matthews coefficient Solvent content 5.24 76.54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 128.279 α = 90 b = 128.279 β = 90 c = 72.519 γ = 120
Symmetry Space Group P 3 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 S 6M 2016-05-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID29 0.8729 ESRF ID29
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 120 99.3 0.103 0.993 11.4 5.6 33160
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.27 99.8 1.237 0.556 1.5 5.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.2 111.09 33160 1660 98.99 0.18546 0.18427 0.1914 0.2091 0.2175 RANDOM 45.312
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.6 0.3 0.6 -1.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.058 r_dihedral_angle_4_deg 18.471 r_dihedral_angle_3_deg 13.776 r_long_range_B_refined 8.251 r_long_range_B_other 8.25 r_dihedral_angle_1_deg 6.197 r_scangle_other 5.859 r_mcangle_it 4.741 r_mcangle_other 4.74 r_scbond_it 3.873
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.058 r_dihedral_angle_4_deg 18.471 r_dihedral_angle_3_deg 13.776 r_long_range_B_refined 8.251 r_long_range_B_other 8.25 r_dihedral_angle_1_deg 6.197 r_scangle_other 5.859 r_mcangle_it 4.741 r_mcangle_other 4.74 r_scbond_it 3.873 r_scbond_other 3.873 r_mcbond_other 3.139 r_mcbond_it 3.137 r_angle_refined_deg 1.779 r_angle_other_deg 0.987 r_chiral_restr 0.097 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_bond_other_d 0.003 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2066 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 213
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling PHASER phasing