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CRYSTAL STRUCTURE OF TRANS-MEMBRANE DOMAIN OF Cylindrospermum stagnale NADPH-OXIDASE 5 (NOX5)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 LIPIDIC CUBIC PHASE 6.5 293 csTM was concentrated to 25 mg-ml and mixed with monoolein (1-oleoyl-rac-glycerol) in a 2:3
protein to lipid ratio using two coupled syringes (Hamilton) at 20 C. The in
meso mix was dispensed manually using a Hamilton syringe coupled to a repetitive dispenser onto a sandwich plate in 120 nl
bolus overlaid by 1 microl of precipitant solution. Crystals grew 30% PEG300, 100 mM Li2SO4, 100 mM MES-KOH pH 6.5
Crystal Properties Matthews coefficient Solvent content 3.53 65.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.371 α = 90 b = 74.57 β = 90 c = 85.12 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2016-10-06 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.99997 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.05 44.6 97.6 0.065 0.981 10.3 3.7 20900
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.05 2.11 98.2 0.597 0.429 2.7 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.05 44.6 19905 971 96.8 0.18696 0.18529 0.1966 0.22094 0.2239 RANDOM 38.363
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 1.29 -1.96
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.707 r_dihedral_angle_3_deg 14.02 r_dihedral_angle_4_deg 10.297 r_long_range_B_refined 5.377 r_long_range_B_other 5.376 r_dihedral_angle_1_deg 4.84 r_scangle_other 3.682 r_scbond_it 2.349 r_scbond_other 2.349 r_mcangle_other 2.138
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 35.707 r_dihedral_angle_3_deg 14.02 r_dihedral_angle_4_deg 10.297 r_long_range_B_refined 5.377 r_long_range_B_other 5.376 r_dihedral_angle_1_deg 4.84 r_scangle_other 3.682 r_scbond_it 2.349 r_scbond_other 2.349 r_mcangle_other 2.138 r_mcangle_it 2.137 r_angle_refined_deg 1.66 r_mcbond_it 1.416 r_mcbond_other 1.415 r_angle_other_deg 0.986 r_chiral_restr 0.116 r_bond_refined_d 0.017 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1650 Nucleic Acid Atoms Solvent Atoms 63 Heterogen Atoms 205
Software Software Software Name Purpose REFMAC refinement XDS data reduction Aimless data scaling SHELXDE phasing