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Selenomethionine labelled Anbu (Gly-1) mutant from Hyphomicrobium sp. strain MC1
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298.15 0.8 M sodium phosphate, 0.8 M potassium phosphate, 0.1 M HEPES
Crystal Properties Matthews coefficient Solvent content 2.17 43.33
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 176.13 α = 90 b = 176.13 β = 90 c = 39.74 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 16M 2015-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X06SA 0.9786 SLS X06SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 40 99.1 0.055 11.8 2.9 23158
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.3 99.6 0.595 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.2 20 11356 598 99.57 0.18299 0.18156 0.1926 0.20919 0.2264 RANDOM 56.497
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.34 0.17 0.34 -1.1
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 33.248 r_dihedral_angle_2_deg 32.885 r_dihedral_angle_4_deg 16.174 r_dihedral_angle_3_deg 13.068 r_sphericity_bonded 9.257 r_dihedral_angle_1_deg 5.51 r_long_range_B_refined 4.127 r_long_range_B_other 4.081 r_scangle_other 3.472 r_mcangle_it 3.179
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 33.248 r_dihedral_angle_2_deg 32.885 r_dihedral_angle_4_deg 16.174 r_dihedral_angle_3_deg 13.068 r_sphericity_bonded 9.257 r_dihedral_angle_1_deg 5.51 r_long_range_B_refined 4.127 r_long_range_B_other 4.081 r_scangle_other 3.472 r_mcangle_it 3.179 r_mcangle_other 3.177 r_scbond_it 3.033 r_scbond_other 2.894 r_mcbond_other 2.583 r_mcbond_it 2.582 r_rigid_bond_restr 1.282 r_angle_refined_deg 1.118 r_angle_other_deg 0.833 r_chiral_restr 0.066 r_bond_refined_d 0.006 r_gen_planes_refined 0.003 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1664 Nucleic Acid Atoms Solvent Atoms 43 Heterogen Atoms 16
Software Software Software Name Purpose REFMAC refinement XDS data reduction XSCALE data scaling CRANK2 phasing