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Crystal structure of the carboxy-terminal region of the bacteriophage T4 proximal long tail fibre protein gp34, residues 795 to 1289, at 1.9 Angstrom.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4UXF
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.2 293 between 4 and 7 % (w/v) PEG 6000
100 mM TrisHCl
Crystal Properties Matthews coefficient Solvent content 3.17 61.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.107 α = 90 b = 75.943 β = 90.21 c = 149.128 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M-F 2012-06-19 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON PHOTON FACTORY BEAMLINE BL-1A 0.9788 Photon Factory BL-1A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 46.12 99 0.115 10 4.9 161501 15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 97 0.425 3.2 4.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4UXF 1.9 46.12 159525 1957 98.91 0.17151 0.17106 0.182 0.20785 0.2122 RANDOM 25.891
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.59 1.59 -0.47 1.05
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.314 r_dihedral_angle_4_deg 15.48 r_dihedral_angle_3_deg 11.334 r_dihedral_angle_1_deg 7.281 r_long_range_B_refined 5.642 r_long_range_B_other 5.642 r_scangle_other 2.379 r_mcangle_it 2.205 r_mcangle_other 2.204 r_scbond_it 1.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.314 r_dihedral_angle_4_deg 15.48 r_dihedral_angle_3_deg 11.334 r_dihedral_angle_1_deg 7.281 r_long_range_B_refined 5.642 r_long_range_B_other 5.642 r_scangle_other 2.379 r_mcangle_it 2.205 r_mcangle_other 2.204 r_scbond_it 1.51 r_scbond_other 1.51 r_angle_refined_deg 1.429 r_mcbond_it 1.403 r_mcbond_other 1.403 r_angle_other_deg 0.943 r_chiral_restr 0.085 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11299 Nucleic Acid Atoms Solvent Atoms 1821 Heterogen Atoms 130
Software Software Software Name Purpose REFMAC refinement XDS data reduction SCALA data scaling MOLREP phasing