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Complex of H275Y mutant variant of neuraminidase from H1N1 influenza virus with oseltamivir
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 3TI6
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 291 PEG 8000, HEPES
Crystal Properties Matthews coefficient Solvent content 3.05 59.67
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.474 α = 90 b = 126.608 β = 93.49 c = 96.56 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2016-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON BESSY BEAMLINE 14.1 0.9184 BESSY 14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 48.19 98.8 0.139 7.63 3.03 137306
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.12 96.9 0.621 1.98 2.98
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3TI6 2 48.19 135202 2100 98.83 0.2359 0.23526 0.2402 0.27721 0.2828 RANDOM 23.246
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.29 -0.06 -0.2 -0.08
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.747 r_dihedral_angle_4_deg 14.165 r_dihedral_angle_3_deg 12.862 r_dihedral_angle_1_deg 7.511 r_long_range_B_refined 4.238 r_long_range_B_other 4.127 r_scangle_other 2.651 r_mcangle_other 2.07 r_mcangle_it 2.069 r_scbond_it 1.731
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.747 r_dihedral_angle_4_deg 14.165 r_dihedral_angle_3_deg 12.862 r_dihedral_angle_1_deg 7.511 r_long_range_B_refined 4.238 r_long_range_B_other 4.127 r_scangle_other 2.651 r_mcangle_other 2.07 r_mcangle_it 2.069 r_scbond_it 1.731 r_scbond_other 1.731 r_angle_refined_deg 1.597 r_mcbond_it 1.404 r_mcbond_other 1.4 r_angle_other_deg 1.005 r_chiral_restr 0.093 r_bond_refined_d 0.014 r_gen_planes_refined 0.007 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12008 Nucleic Acid Atoms Solvent Atoms 1380 Heterogen Atoms 316
Software Software Software Name Purpose REFMAC refinement XDS data scaling XDS data reduction MOLREP phasing