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Cytosolic Malate Dehydrogenase 1 (peroxide-treated)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 8 283 1.5 M ammonium sulfate, 0.1 M Tris-HCl
Crystal Properties Matthews coefficient Solvent content 2.66 53.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.598 α = 90 b = 118.374 β = 90 c = 148.489 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS EIGER X 9M 2016-02-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SOLEIL BEAMLINE PROXIMA 2 0.980105 SOLEIL PROXIMA 2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Rrim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.35 92.561 99.96 0.1092 0.973 5.56 13.6 236503 14.47098422
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.35 1.398 99.98 2.934 0.798 0.369 0.63 13.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT FREE R-VALUE 1.35000279615 92.5612886735 1.32522207677 248886 12401 99.9213110542 0.147967919778 0.146297730068 0.1469 0.179506294341 0.1796 21.3464790462
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation f_dihedral_angle_d 15.6948976242 f_angle_d 1.41329654806 f_chiral_restr 0.102487858011 f_bond_d 0.0137813152937 f_plane_restr 0.00854898620317
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7454 Nucleic Acid Atoms Solvent Atoms 999 Heterogen Atoms 283
Software Software Software Name Purpose PHENIX refinement XDS data reduction Aimless data scaling PHASER phasing