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Structure of truncated Norcoclaurine Synthase from Thalictrum flavum with product mimic
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 289 10% W/V POLYETHYLENE GLYCOL 1000, 10%
REMARK 280 W/V POLYETHYLENE GLYCOL 8000 20 MM TRIS, 50 MM NACL, PH 7.5, PH
REMARK 280 8.5, 10 mM Ligand
Crystal Properties Matthews coefficient Solvent content 2.64 53.43
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.31 α = 90 b = 110.218 β = 90 c = 136.902 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M-F 2016-04-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I02 0.97949 Diamond I02
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 85.85 100 0.09 0.032 11.2 8.5 50659
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.85 1.89 100 1.009 0.35 1.8 8.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 1.85 86 48057 2535 99.96 0.1888 0.18693 0.1956 0.22351 0.2292 RANDOM 36.86
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.48 -1.61 2.09
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.982 r_dihedral_angle_3_deg 15.102 r_dihedral_angle_1_deg 6.404 r_long_range_B_refined 5.045 r_long_range_B_other 5.045 r_dihedral_angle_4_deg 4.124 r_scangle_other 3.069 r_angle_refined_deg 2.793 r_mcangle_other 2.296 r_mcangle_it 2.295
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.982 r_dihedral_angle_3_deg 15.102 r_dihedral_angle_1_deg 6.404 r_long_range_B_refined 5.045 r_long_range_B_other 5.045 r_dihedral_angle_4_deg 4.124 r_scangle_other 3.069 r_angle_refined_deg 2.793 r_mcangle_other 2.296 r_mcangle_it 2.295 r_scbond_it 1.985 r_scbond_other 1.985 r_mcbond_it 1.49 r_mcbond_other 1.479 r_angle_other_deg 1.304 r_chiral_restr 0.197 r_bond_refined_d 0.032 r_gen_planes_refined 0.016 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3660 Nucleic Acid Atoms Solvent Atoms 447 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling REFMAC phasing