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HLA A02 presenting SLFNTIAVL
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1 M Sodium Cacodylate, pH 6.0, 25% PEG 4000, 0.2 M Ammonium Sulphate
Crystal Properties Matthews coefficient Solvent content 2.58 52.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 55.84 α = 90 b = 79.03 β = 116.11 c = 58.37 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2011-05-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9778 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.655 48.4 98.9 0.074 9.5 3.6 53961 22.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.655 1.7 99.8 1.3 2.1 3.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.66 48.4 50896 2724 98.8 0.17707 0.17533 0.1839 0.20979 0.2153 RANDOM 24.242
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.78 -0.29 0.5 -0.67
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.537 r_dihedral_angle_4_deg 18.797 r_dihedral_angle_3_deg 13.506 r_long_range_B_refined 6.928 r_long_range_B_other 6.828 r_dihedral_angle_1_deg 6.567 r_scangle_other 2.472 r_angle_refined_deg 1.831 r_mcangle_it 1.684 r_mcangle_other 1.684
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.537 r_dihedral_angle_4_deg 18.797 r_dihedral_angle_3_deg 13.506 r_long_range_B_refined 6.928 r_long_range_B_other 6.828 r_dihedral_angle_1_deg 6.567 r_scangle_other 2.472 r_angle_refined_deg 1.831 r_mcangle_it 1.684 r_mcangle_other 1.684 r_scbond_it 1.597 r_scbond_other 1.59 r_angle_other_deg 1.032 r_mcbond_it 1.019 r_mcbond_other 1.014 r_chiral_restr 0.112 r_bond_refined_d 0.017 r_gen_planes_refined 0.01 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3160 Nucleic Acid Atoms Solvent Atoms 293 Heterogen Atoms 52
Software Software Software Name Purpose REFMAC refinement XDS data reduction xia2 data reduction SCALA data scaling PHASER phasing