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868 TCR in complex with HLA A02 presenting SLYFNTIAVL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BNU 2BNU, 2V2W experimental model PDB 2V2W 2BNU, 2V2W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1 M Sodium Cacodylate, pH 5.5, 15% PEG 4000, 0.2 M Ammonium Sulphate
Crystal Properties Matthews coefficient Solvent content 2.67 53.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 209.36 α = 90 b = 85.11 β = 90 c = 113.15 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 2M 2011-04-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I04-1 .9173 Diamond I04-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.72 99.5 99.7 0.119 12.8 7.4 54939
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.72 2.79 99.7 0.909 2.4 7.6
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BNU, 2V2W 2.75 39.83 50795 2717 99.9 0.19892 0.19598 0.2006 0.25449 0.2564 RANDOM 60.233
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 2.58 -1.89 -0.68
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.1 r_dihedral_angle_3_deg 21.921 r_dihedral_angle_4_deg 21.584 r_dihedral_angle_1_deg 7.764 r_long_range_B_refined 3.916 r_long_range_B_other 3.914 r_angle_refined_deg 1.962 r_scangle_other 1.846 r_mcangle_it 1.646 r_mcangle_other 1.646
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.1 r_dihedral_angle_3_deg 21.921 r_dihedral_angle_4_deg 21.584 r_dihedral_angle_1_deg 7.764 r_long_range_B_refined 3.916 r_long_range_B_other 3.914 r_angle_refined_deg 1.962 r_scangle_other 1.846 r_mcangle_it 1.646 r_mcangle_other 1.646 r_angle_other_deg 1.171 r_scbond_it 1.146 r_scbond_other 1.134 r_mcbond_other 0.956 r_mcbond_it 0.955 r_chiral_restr 0.135 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13310 Nucleic Acid Atoms Solvent Atoms 147 Heterogen Atoms 97
Software Software Software Name Purpose REFMAC refinement XDS data reduction xia2 data reduction SCALA data scaling PHASER phasing