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868 TCR in complex with HLA A02 presenting SLYNTIATL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BNU 2BNU, 2V2W experimental model PDB 2V2W 2BNU, 2V2W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1 M Sodium Cacodylate, pH 6.0, 15% PEG 4000, 0.2 M Ammonium Sulphate
Crystal Properties Matthews coefficient Solvent content 2.62 53.02
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 207.59 α = 90 b = 84.71 β = 90 c = 112.12 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-10-08 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.89 34.38 100 0.151 10.9 7.9 45223 60.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.89 2.96 100 0.84 2.9 8.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BNU, 2V2W 2.89 112.12 42905 2277 99.91 0.19587 0.19278 0.1959 0.25527 0.2549 RANDOM 57.387
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 4.12 -1.64 -2.48
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.662 r_dihedral_angle_3_deg 20.945 r_dihedral_angle_4_deg 19.232 r_dihedral_angle_1_deg 8.192 r_long_range_B_refined 3.599 r_long_range_B_other 3.581 r_angle_refined_deg 1.871 r_mcangle_it 1.399 r_mcangle_other 1.399 r_scangle_other 1.347
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.662 r_dihedral_angle_3_deg 20.945 r_dihedral_angle_4_deg 19.232 r_dihedral_angle_1_deg 8.192 r_long_range_B_refined 3.599 r_long_range_B_other 3.581 r_angle_refined_deg 1.871 r_mcangle_it 1.399 r_mcangle_other 1.399 r_scangle_other 1.347 r_angle_other_deg 1.093 r_scbond_it 0.876 r_scbond_other 0.804 r_mcbond_it 0.782 r_mcbond_other 0.782 r_chiral_restr 0.11 r_bond_refined_d 0.016 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13280 Nucleic Acid Atoms Solvent Atoms 77 Heterogen Atoms 154
Software Software Software Name Purpose REFMAC refinement XDS data reduction xia2 data reduction SCALA data scaling PHASER phasing