X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 2BNU2BNU, 2V2W
experimental modelPDB 2V2W2BNU, 2V2W

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP2910.1 M Sodium Cacodylate, pH 6.0, 15% PEG 4000, 0.2 M Ammonium Sulphate
Crystal Properties
Matthews coefficientSolvent content
2.6253.02

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 207.59α = 90
b = 84.71β = 90
c = 112.12γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 315r2010-10-08MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONDIAMOND BEAMLINE I030.9763DiamondI03

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.8934.381000.15110.97.94522360.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.892.961000.842.98.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2BNU, 2V2W2.89112.1242905227799.910.195870.192780.25527RANDOM57.387
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
4.12-1.64-2.48
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.662
r_dihedral_angle_3_deg20.945
r_dihedral_angle_4_deg19.232
r_dihedral_angle_1_deg8.192
r_long_range_B_refined3.599
r_long_range_B_other3.581
r_angle_refined_deg1.871
r_mcangle_it1.399
r_mcangle_other1.399
r_scangle_other1.347
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.662
r_dihedral_angle_3_deg20.945
r_dihedral_angle_4_deg19.232
r_dihedral_angle_1_deg8.192
r_long_range_B_refined3.599
r_long_range_B_other3.581
r_angle_refined_deg1.871
r_mcangle_it1.399
r_mcangle_other1.399
r_scangle_other1.347
r_angle_other_deg1.093
r_scbond_it0.876
r_scbond_other0.804
r_mcbond_it0.782
r_mcbond_other0.782
r_chiral_restr0.11
r_bond_refined_d0.016
r_gen_planes_refined0.008
r_bond_other_d0.002
r_gen_planes_other0.002
r_nbd_refined
r_nbd_other
r_nbtor_refined
r_nbtor_other
r_xyhbond_nbd_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_refined
r_symmetry_vdw_other
r_symmetry_hbond_refined
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_scangle_it
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13280
Nucleic Acid Atoms
Solvent Atoms77
Heterogen Atoms154

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
xia2data reduction
SCALAdata scaling
PHASERphasing