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868 TCR in complex with HLA A02 presenting SLYNTVATL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BNU 2BNU, 2V2W experimental model PDB 2V2W 2BNU, 2V2W
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1 M Sodium Cacodylate, pH 6.0, 15% PEG 4000, 0.2 M Ammonium Sulphate
Crystal Properties Matthews coefficient Solvent content 2.69 54.26
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 211.14 α = 90 b = 85.14 β = 90 c = 113.19 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315r 2010-04-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.94 64.76 99.1 0.125 12.4 7.5 44013
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.94 3.01 99.8 0.959 2.1 7.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BNU, 2V2W 2.94 64.76 41746 2212 98.97 0.19947 0.1961 0.1989 0.26326 0.264 RANDOM 71.995
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.75 -2.92 1.17
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.575 r_dihedral_angle_3_deg 21.13 r_dihedral_angle_4_deg 17.233 r_dihedral_angle_1_deg 8.203 r_long_range_B_refined 5.917 r_long_range_B_other 5.915 r_scangle_other 2.812 r_mcangle_it 2.691 r_mcangle_other 2.691 r_angle_refined_deg 1.972
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 37.575 r_dihedral_angle_3_deg 21.13 r_dihedral_angle_4_deg 17.233 r_dihedral_angle_1_deg 8.203 r_long_range_B_refined 5.917 r_long_range_B_other 5.915 r_scangle_other 2.812 r_mcangle_it 2.691 r_mcangle_other 2.691 r_angle_refined_deg 1.972 r_scbond_it 1.72 r_scbond_other 1.696 r_mcbond_it 1.583 r_mcbond_other 1.582 r_angle_other_deg 1.116 r_chiral_restr 0.117 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 13316 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms 73
Software Software Software Name Purpose REFMAC refinement XDS data reduction xia2 data reduction SCALA data scaling PHASER phasing