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868 TCR Specific for HLA A02 presenting HIV Epitope SLYNTVATL
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BNU
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 291 0.1 M Sodium Cacodylate, pH 6.5, 20% PEG 8000
Crystal Properties Matthews coefficient Solvent content 2.55 51.72
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.47 α = 90 b = 50.62 β = 90.16 c = 114.31 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2011-05-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.9778 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.07 43.81 98.6 0.05 12.1 3.5 60507 40.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.07 2.13 99.6 0.723 2.3 3.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2BNU 2.07 43.81 57421 3051 98.48 0.19039 0.18857 0.1963 0.22319 0.2312 RANDOM 56.984
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.58 -1.41 2.81 -1.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.445 r_dihedral_angle_4_deg 19.492 r_dihedral_angle_3_deg 16.929 r_dihedral_angle_1_deg 7.267 r_long_range_B_refined 7.053 r_long_range_B_other 7.016 r_scangle_other 4.28 r_mcangle_it 3.621 r_mcangle_other 3.621 r_scbond_it 2.912
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.445 r_dihedral_angle_4_deg 19.492 r_dihedral_angle_3_deg 16.929 r_dihedral_angle_1_deg 7.267 r_long_range_B_refined 7.053 r_long_range_B_other 7.016 r_scangle_other 4.28 r_mcangle_it 3.621 r_mcangle_other 3.621 r_scbond_it 2.912 r_scbond_other 2.783 r_mcbond_it 2.25 r_mcbond_other 2.249 r_angle_refined_deg 1.97 r_angle_other_deg 1.125 r_chiral_restr 0.143 r_bond_refined_d 0.019 r_gen_planes_refined 0.008 r_bond_other_d 0.002 r_gen_planes_other 0.002 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6998 Nucleic Acid Atoms Solvent Atoms 207 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement xia2 data reduction XDS data reduction Aimless data scaling PHASER phasing