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Crystal structure of the V325G mutant of the bacteriophage G20C portal protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 Protein in 1 M NaCl, 20 mM Tris pH 7.5.
Reservoir: 0.1 M Imidazole HCl pH 8.0, 30% (w/v) MPD, 10% (w/v) PEG 4000.
Crystal Properties Matthews coefficient Solvent content 3.04 60.53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 223.234 α = 90 b = 223.234 β = 90 c = 115.817 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS3 6M 2016-09-24 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I24 0.97883 Diamond I24
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 111.62 97.8 0.168 0.943 3.3 2.1 165587
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.93 97.8 0.736 0.401 1.1 2.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 111.62 164209 1623 97.75 0.20623 0.20605 0.213 0.22512 0.2285 RANDOM 27.625
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.3 0.15 0.3 -0.97
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.421 r_dihedral_angle_4_deg 18.682 r_dihedral_angle_3_deg 13.299 r_dihedral_angle_1_deg 6.403 r_long_range_B_refined 3.765 r_long_range_B_other 3.722 r_scangle_other 2.245 r_angle_refined_deg 1.724 r_mcangle_it 1.694 r_mcangle_other 1.694
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.421 r_dihedral_angle_4_deg 18.682 r_dihedral_angle_3_deg 13.299 r_dihedral_angle_1_deg 6.403 r_long_range_B_refined 3.765 r_long_range_B_other 3.722 r_scangle_other 2.245 r_angle_refined_deg 1.724 r_mcangle_it 1.694 r_mcangle_other 1.694 r_scbond_it 1.401 r_scbond_other 1.401 r_mcbond_it 1.044 r_mcbond_other 1.044 r_angle_other_deg 1.019 r_chiral_restr 0.104 r_bond_refined_d 0.017 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 12337 Nucleic Acid Atoms Solvent Atoms 703 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DIALS data reduction Aimless data scaling SHELX phasing